PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0240s0100.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 665aa    MW: 73882.2 Da    PI: 8.7596
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0240s0100.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.6e-24153254199
                             EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                             f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+
  SapurV1A.0240s0100.4.p 153 FCKTLTASDTSTHGGFSVPRRAAEDCfpsldyK-QQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVL 238
                             99****************************963.3445679********************************************** PP

                             EEE-SSSEE..EEEEE-S CS
                      B3  82 Fkldgrsefelvvkvfrk 99 
                             F   + +++el+++++r+
  SapurV1A.0240s0100.4.p 239 FL--RGEDGELRLGIRRA 254
                             **..449999*****996 PP

2Auxin_resp112.73.4e-37279360182
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                             +++a+stks+F+v Y+Pra+++ Fvv+++k+ k++++ v+ G+Rfkm+fe++ds+err sG+v+g+ dldp++WpnSkWr+L
  SapurV1A.0240s0100.4.p 279 VSNAISTKSMFTVSYSPRATHAVFVVPYQKYIKSISNAVCTGTRFKMRFEMDDSPERRRSGVVSGTADLDPYKWPNSKWRCL 360
                             5799*****************************************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-40143265IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-44145259IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-22151253No hitNo description
PfamPF023622.3E-22153254IPR003340B3 DNA binding domain
PROSITE profilePS5086313.14153255IPR003340B3 DNA binding domain
SMARTSM010191.4E-23153255IPR003340B3 DNA binding domain
PfamPF065071.7E-31279360IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MEIDLNHPVT EVEKNAFCTN GDSSSSSNSS SSPISSSIYL ELWHACAGPL TSLPNKGNVV  60
VYFPQGHLEQ LASSSPFPYR NMPNFDLHPQ IFCKVVNVQL LANRENDEVY TRLTLLPRPE  120
VVGQGLEGKE FQELGVDGEG DDASPTKSTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP  180
SLDYKQQRPS QELVAKDLHG VEWKFRHIYR GQPRRHLLTT GWSIFVSQKN LVSGDAVLFL  240
RGEDGELRLG IRRAGRPRNG LPDSVTGKQN SLPSALSLVS NAISTKSMFT VSYSPRATHA  300
VFVVPYQKYI KSISNAVCTG TRFKMRFEMD DSPERRRSGV VSGTADLDPY KWPNSKWRCL  360
MVRWDEDVIS DHQERVSPWE IDTSVSLPPL IIQSSPRLKK LRSGLQAAPP DKPIAGGGGF  420
LDFEESVRSS KVLQGQENDG LLSPVYRRDI VNHPLDFEVQ NKAQQNLILT GIEKAKISEL  480
TRAHPATHTG FTESDRFLKV LQGQEICSLS SIGTLRKPNI GCSSFQMYPG PRPTFYPVAA  540
ESLRSMYFPY GDVFKNEQDP RTQSYAIFSR ENAHSNTSSI QTCVVREEVR KPNHSSEYKK  600
PESISAAPAL CANLRNQKDG FFNGNATGCK LFGFSLNAET SPNSQNTGKR SCTKVSYIRV  660
KTRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_B1e-116243822353Auxin response factor 1
4ldy_A1e-116243822353Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044386.10.0PREDICTED: auxin response factor 4 isoform X1
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A067LHL50.0A0A067LHL5_JATCU; Auxin response factor
STRINGVIT_06s0004g03130.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4